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A Database of
Drosophila
Genes & Genomes
FB2008_05, released May 30, 2008
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D. melanogaster
(R5.8; May 2008)
Instructions
Instructions
[Help]
"Landmark or Region Search": sequence region or exact ID/Symbol (but not full name, for example, ct but not cut), case-sensitive, no wildcards.
"Advanced Search": cytolocations, symbols (wildcards allowed).
To center on a location, click the ruler. Use the Scroll/Zoom buttons to change magnification and position.
Examples
:
cnn
,
FBgn0000490
,
X:60000..80000
,
2L:80,000..100,000
,
2R:80,000..100,000
,
3L:80,000..100,000
,
3R:80,000..100,000
,
4:20000..50000
.
Search
Search
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Advanced Search:
Cytolocation
Gene Symbol
Gene Symbol (case-sens.)
Landmark or Region
:
Report & Analysis tools
:
Download Decorated FASTA File
Download GFF File
Download Genbank format file
Download HTML table view
Data Source
A. gambiae (mosquito)
C. elegans (worm)
D. ananassae
D. erecta
D. grimshawi
D. melanogaster (R5.8)
D. mojavensis
D. persimilis
D. pseudoobscura (R2.2)
D. sechellia
D. simulans
D. virilis
D. willistoni
D. yakuba
Insertions in Stock Collections
Scroll/Zoom:
Show 500 kbp
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Show 100 kbp
Show 40 kbp
Show 20 kbp
Show 14.09 kbp
Show 10 kbp
Show 5 kbp
Show 2 kbp
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Flip
Overview
Overview
Details
Details
Clear highlighting
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Tracks
Tracks
Gene Model features
Gene Model features
Gene Span
mRNA
CDS
General
General
3-frame translation (forward)
3-frame translation (reverse)
DNA/GC Content
Blast hit
Genome reagents and data
Genome reagents and data
cDNA and Aligned genomic sequences
Affymetrix v2
HFAAmplicons
Tiling BAC
EST
DGRC-1 amplicons
DGRC-2 oligos
PeptideAtlas peptides
Affymetrix v1
BKNAmplicons
DRSC RNAi amplicons
Genomic features
Genomic features
Cytological band
Non coding RNA
Transgene insertion site
tRNA
Natural transposon
High Throughput data (Arrays)
High Throughput data (Arrays)
Timecourse (Arbeitman et al.)
Mapped features
Mapped features
protein_binding_site
transposable element target site duplication
Mutation: sequence variant
Mutation: complex substitution
rescue fragment
regulatory region
Mutation: uncharacterized change in nucleotide_sequence
Mutation: deletion
enhancer
Mutation: point mutation
Mutation: aberration junction
Mutation: insertion site
Prediction features
Prediction features
Promoter prediction
Genscan prediction
HDP prediction
NCBI gnomon prediction
CONGO exons
Repeat region
Genie prediction
RNAiHDP prediction
CONTRAST prediction
Augustus prediction
GeneID prediction
tRNAscan prediction
SNAP prediction
Prior annotations
Prior annotations
Dmel r32 transcript
Dmel r2 transcript
Dmel ARGs
Dmel r31 transcript
Dros smallRNA
Dmel ARGs CDS
Similarity: Proteins
Similarity: Proteins
D melanogaster protein
Yeast protein
Vertebrate protein
Other Insect proteins
Other invert. protein
Plant protein
Worm protein
Primate protein
other proteins
Similarity: Synteny features
Similarity: Synteny features
Orthologs
Syntenic region (FlyBase)
Similarity: Translated nucleotides
Similarity: Translated nucleotides
D pseudoobscura contigs
Insect dbEST
Mosquito NA
Display Settings
Display Settings
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Key position
Between
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Track Name Table
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Highlight feature(s) (feature1 feature2...)
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Add your own tracks
Add your own tracks
Upload your own annotations:
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Upload a file
Add remote annotations:
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Enter Remote Annotation URL